chromosome 2
100800 bytes allocated in orders_morecore
3024000 bytes allocated in morecore
Option chosen: flips3
Current values for parameters:
par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000 [# bytes reserved for our_alloc]
SEX_EQ = 1 [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 2.000
PK_LIKE_TOL = 2.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1
Haplotyped system (distances forced to 0.0):
0 CRYG1-5 2 CRYG1-5_2 4 CRYG1-5_3
Haplotyped system (distances forced to 0.0):
1 D2S54 3 D2S54_2
Haplotyped system (distances forced to 0.0):
24 D2S38_2 23 D2S38
Haplotyped system (distances forced to 0.0):
40 D2S5_2 39 D2S5
Haplotyped system (distances forced to 0.0):
42 D2S1_2 41 D2S1
Haplotyped system (distances forced to 0.0):
44 TPO 45 TPO_2
Haplotyped system (distances forced to 0.0):
54 APOB_2 53 APOB
Haplotyped system (distances forced to 0.0):
64 D2S61_2 63 D2S61
Haplotyped system (distances forced to 0.0):
75 TGFA_3 73 TGFA_2 72 TGFA
76 TGFA_4
N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.
0 CRYG1-5
21 D2S40
55 D2S51
61 LCT
68 D2S44
77 Prot_C/pcr
1 D2S54
49 LCO
20 D2S41
69 D2S43
10 D2S25
33 D2S62
24 D2S38_2
59 D2S45
26 D2S30
28 D2S31
40 D2S5_2
31 D2S28
66 D2S6
17 D2S19
70 D2S46
56 D2S48
54 APOB_2
50 D2S70
44 TPO
65 D2S47
42 D2S1_2
5 ACP1
number of loci to flip = 3
Original order, & its log10_likelihood, followed by
flipped orders, with their relative log10_likelihoods
(= log10_like[orig] - log10_like[curr])
0 21 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 -1141.01
- - - - - 1 77 - - - - - - - - - - - - - - - - - - - - - 0.76
- - - - - - - - - - - - - - - - - - - - 56 70 - - - - - - 1.27