chromosome 2

100800 bytes allocated in orders_morecore

3024000 bytes allocated in morecore

Option chosen: all

Current values for parameters:

par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000    [# bytes reserved for our_alloc]
SEX_EQ = 1   [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 2.000
PK_LIKE_TOL = 2.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1



Haplotyped system (distances forced to 0.0):

  0   CRYG1-5               2   CRYG1-5_2             4   CRYG1-5_3           


Haplotyped system (distances forced to 0.0):

  1   D2S54                 3   D2S54_2             

Haplotyped system (distances forced to 0.0):

 24   D2S38_2              23   D2S38               

Haplotyped system (distances forced to 0.0):

 40   D2S5_2               39   D2S5                

Haplotyped system (distances forced to 0.0):

 42   D2S1_2               41   D2S1                

Haplotyped system (distances forced to 0.0):

 44   TPO                  45   TPO_2               

Haplotyped system (distances forced to 0.0):

 54   APOB_2               53   APOB                

Haplotyped system (distances forced to 0.0):

 64   D2S61_2              63   D2S61               

Haplotyped system (distances forced to 0.0):

 75   TGFA_3               73   TGFA_2               72   TGFA                
 76   TGFA_4              

N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.



  0   CRYG1-5             
  1   D2S54               
  5   ACP1                
  9   CPSI                
 10   D2S25               
 14   D2S35               
 17   D2S19               
 20   D2S41               
 21   D2S40               
 24   D2S38_2             
 26   D2S30               
 28   D2S31               
 31   D2S28               
 33   D2S62               
 40   D2S5_2              
 42   D2S1_2              
 44   TPO                 
 49   LCO                 
 50   D2S70               
 54   APOB_2              
 55   D2S51               
 56   D2S48               
 59   D2S45               
 61   LCT                 
 65   D2S47               
 66   D2S6                
 68   D2S44               
 69   D2S43               
 70   D2S46               
 77   Prot_C/pcr          



ordered loci:
0 21 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 

inserted loci:
9 14 



  9   0  14  21  55  61  68  77   1  49  20  69  10  33  24  59  26  28  40  31  66  17  70  56  54  50  44  65  42   5   -1227.964
  9  14   0  21  55  61  68  77   1  49  20  69  10  33  24  59  26  28  40  31  66  17  70  56  54  50  44  65  42   5   -1228.338
 14   0   9  21  55  61  68  77   1  49  20  69  10  33  24  59  26  28  40  31  66  17  70  56  54  50  44  65  42   5   -1228.614
  0  14   9  21  55  61  68  77   1  49  20  69  10  33  24  59  26  28  40  31  66  17  70  56  54  50  44  65  42   5   -1229.276