Cattle QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2017-10-23
Updated: 2024-04-23

Publication # 28923017 Details

Authors:	Sanchez MP, Govignon-Gion A, Croiseau P, Fritz S, Hozé C, Miranda G, Martin P, Barbat-Leterrier A, Letaïef R, Rocha D, Brochard M, Boussaha M, Boichard D (Contact: marie-pierre.sanchez@inra.fr)
Affiliation:	GABI, INRA, AgroParisTech, Université Paris Saclay, 78350, Jouy-en-Josas, France
Title:	Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle
Journal:	Genetics, Selection, Evolution : GSE, 49(1): 68 (2017)	DOI: 10.1186/s12711-017-0344-z
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Milk protein content reported for chromosome(s): Chr.3: QTL:140213. Chr.5: QTL:140216. Chr.6: QTL:140140, QTL:140146, QTL:140150, QTL:140155. Chr.14: QTL:140188, QTL:140192, QTL:140195, QTL:140229, QTL:140230, QTL:140231. Chr.20: QTL:140236, QTL:140237, QTL:140238. Chr.29: QTL:140251. QTL for Milk alpha-S1-casein percentage reported for chromosome(s): Chr.1: QTL:140201, QTL:140202. Chr.2: QTL:140204, QTL:140205. Chr.6: QTL:140141, QTL:140151, QTL:140156, QTL:140217, QTL:140218, QTL:140219, QTL:140220, QTL:140221, QTL:140222, QTL:140223, QTL:140224, QTL:140225, QTL:140226. Chr.11: QTL:140161, QTL:140168, QTL:140174, QTL:140180. Chr.14: QTL:140189, QTL:140196. Chr.19: QTL:140234, QTL:140235. Chr.29: QTL:140248, QTL:140249, QTL:140250. QTL for Milk alpha-S2-casein percentage reported for chromosome(s): Chr.2: QTL:140206, QTL:140207, QTL:140210, QTL:140211. Chr.3: QTL:140212. Chr.4: QTL:140214. Chr.6: QTL:140142, QTL:140147, QTL:140152, QTL:140157, QTL:140227. Chr.11: QTL:140181. Chr.14: QTL:140193, QTL:140197. Chr.20: QTL:140242. QTL for Milk beta-lactoglobulin percentage reported for chromosome(s): Chr.6: QTL:140143, QTL:140158. Chr.11: QTL:140163, QTL:140169, QTL:140175, QTL:140183. QTL for Milk beta-casein percentage reported for chromosome(s): Chr.2: QTL:140208. Chr.4: QTL:140215. Chr.6: QTL:140144, QTL:140148, QTL:140153, QTL:140159. Chr.10: QTL:140228. Chr.11: QTL:140164, QTL:140170, QTL:140176, QTL:140184. Chr.14: QTL:140191, QTL:140199. Chr.17: QTL:140233. Chr.21: QTL:140244. QTL for Milk kappa-casein percentage reported for chromosome(s): Chr.2: QTL:140209. Chr.6: QTL:140145, QTL:140149, QTL:140154, QTL:140160. Chr.11: QTL:140165, QTL:140167, QTL:140171, QTL:140177, QTL:140185. Chr.14: QTL:140194, QTL:140200. Chr.16: QTL:140232. QTL for Milk alpha-lactalbumin percentage reported for chromosome(s): Chr.1: QTL:140203. Chr.11: QTL:140162, QTL:140182. Chr.14: QTL:140190, QTL:140198. Chr.20: QTL:140239, QTL:140240, QTL:140241, QTL:140243. Chr.22: QTL:140245. QTL for Milk whey protein content reported for chromosome(s): Chr.11: QTL:140166, QTL:140172, QTL:140178, QTL:140186. QTL for Milk casein percentage reported for chromosome(s): Chr.11: QTL:140173, QTL:140179, QTL:140187. Chr.25: QTL:140246, QTL:140247. QTL/association Reported by chromosomes: Chr.1 (3), Chr.2 (8), Chr.3 (2), Chr.4 (2), Chr.5 (1), Chr.6 (32), Chr.10 (1), Chr.11 (27), Chr.14 (16), Chr.16 (1), Chr.17 (1), Chr.19 (2), Chr.20 (8), Chr.21 (1), Chr.22 (1), Chr.25 (2), Chr.29 (4). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Sanchez MP, Govignon-Gion A, Croiseau P, Fritz S, Hozé C, Miranda G, Martin P, Barbat-Leterrier A, Letaïef R, Rocha D, Brochard M, Boussaha M, Boichard D (2017). Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle. Genetics, Selection, Evolution : GSE, 49(1): 68; Curated into QTLdb on 2017-10-24. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=PuMj5A7SnM

Sanchez MP, Govignon-Gion A, Croiseau P, Fritz S, Hozé C, Miranda G, Martin P, Barbat-Leterrier A, Letaïef R, Rocha D, Brochard M, Boussaha M, Boichard D (2017). Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle. Genetics, Selection, Evolution : GSE, 49(1): 68; DOI: https://dx.doi.org/10.1186/s12711-017-0344-z

Publication # 28923017 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: