Cattle QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2019-10-16
Updated: 2024-04-23

Publication # 31262251 Details

Authors:	Sanchez MP, Ramayo-Caldas Y2, Wolf V, Laithier C, El Jabri M, Michenet A, Boussaha M, Taussat S, Fritz S, Delacroix-Buchet A, Brochard M, Boichard D (Contact: marie-pierre.sanchez@inra.fr)
Affiliation:	GABI, INRA, AgroParisTech, Université Paris Saclay, 78350, Jouy-en-Josas, France
Title:	Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows
Journal:	Genetics, Selection, Evolution : GSE, 51(1): 34 (2019)	DOI: 10.1186/s12711-019-0473-7
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Curd firmness reported for chromosome(s): Chr.1: QTL:180122. Chr.3: QTL:180142, QTL:180143. Chr.4: QTL:180146. Chr.6: QTL:180164, QTL:180165, QTL:180177, QTL:180178, QTL:180179, QTL:180192. Chr.7: QTL:180198, QTL:180199. Chr.11: QTL:180213, QTL:180214, QTL:180215. Chr.14: QTL:180238. Chr.16: QTL:180260, QTL:180265. Chr.17: QTL:180276. Chr.18: QTL:180281. Chr.20: QTL:180297. Chr.22: QTL:180316. QTL for Milk acidity/alkalinity reported for chromosome(s): Chr.1: QTL:180123. Chr.4: QTL:180147. Chr.6: QTL:180193. Chr.11: QTL:180210. Chr.13: QTL:180234. Chr.14: QTL:180166. Chr.22: QTL:180321. Chr.24: QTL:180322. Chr.28: QTL:180348. QTL for Milk alpha-S1-casein percentage reported for chromosome(s): Chr.1: QTL:180124. Chr.2: QTL:180129. Chr.4: QTL:180148. Chr.6: QTL:180168, QTL:180183. Chr.11: QTL:180218. Chr.14: QTL:180242. Chr.16: QTL:180263. Chr.20: QTL:180299. Chr.24: QTL:180323. Chr.29: QTL:180349. QTL for Milk phosphorus content reported for chromosome(s): Chr.1: QTL:180125. Chr.11: QTL:180225. Chr.14: QTL:180172, QTL:180255. Chr.15: QTL:180258. Chr.16: QTL:180272. Chr.22: QTL:180319. Chr.24: QTL:180324, QTL:180327. QTL for Milk magnesium content reported for chromosome(s): Chr.1: QTL:180126. Chr.3: QTL:180141. Chr.4: QTL:180153. Chr.6: QTL:180191. Chr.16: QTL:180273. Chr.20: QTL:180306. Chr.21: QTL:180312. Chr.22: QTL:180320. Chr.27: QTL:180347. QTL for Milk potassium content reported for chromosome(s): Chr.1: QTL:180127. Chr.6: QTL:180173. Chr.14: QTL:180256. Chr.16: QTL:180274. Chr.17: QTL:180280. Chr.20: QTL:180307. Chr.24: QTL:180325. QTL for Milk sodium content reported for chromosome(s): Chr.1: QTL:180128. Chr.2: QTL:180131, QTL:180136. Chr.4: QTL:180154. Chr.7: QTL:180196. Chr.12: QTL:180229. Chr.16: QTL:180275. Chr.21: QTL:180313. Chr.29: QTL:180354. QTL for Milk alpha-S2-casein percentage reported for chromosome(s): Chr.2: QTL:180130, QTL:180133. Chr.4: QTL:180149. Chr.6: QTL:180169, QTL:180184. Chr.7: QTL:180200. Chr.11: QTL:180219. Chr.16: QTL:180261. Chr.17: QTL:180277. Chr.19: QTL:180295. Chr.20: QTL:180300. Chr.21: QTL:180310. Chr.29: QTL:180350. QTL for Milk lactose content reported for chromosome(s): Chr.2: QTL:180132. Chr.4: QTL:180152. Chr.6: QTL:180174. Chr.7: QTL:180197. Chr.12: QTL:180230. Chr.15: QTL:180259. Chr.16: QTL:180264. Chr.19: QTL:180296. Chr.29: QTL:180355. QTL for Milk kappa-casein percentage reported for chromosome(s): Chr.2: QTL:180134. Chr.4: QTL:180150. Chr.6: QTL:180186. Chr.7: QTL:180201. Chr.11: QTL:180221. Chr.14: QTL:180243. Chr.16: QTL:180262. Chr.17: QTL:180279. Chr.18: QTL:180282. Chr.19: QTL:180292. Chr.20: QTL:180301. Chr.25: QTL:180328. QTL for Milk casein percentage reported for chromosome(s): Chr.2: QTL:180135. Chr.6: QTL:180162, QTL:180171, QTL:180187. Chr.11: QTL:180222. Chr.14: QTL:180244. Chr.17: QTL:180293. Chr.20: QTL:180302. Chr.29: QTL:180351. QTL for Curd yield reported for chromosome(s): Chr.3: QTL:180137. Chr.5: QTL:180158. Chr.6: QTL:180163, QTL:180175. Chr.11: QTL:180206, QTL:180211. Chr.14: QTL:180236. Chr.19: QTL:180284. Chr.22: QTL:180314. Chr.27: QTL:180337. QTL for Curd solids yield reported for chromosome(s): Chr.3: QTL:180138. Chr.5: QTL:180159. Chr.6: QTL:180176. Chr.11: QTL:180207, QTL:180212. Chr.14: QTL:180237. Chr.19: QTL:180285. Chr.22: QTL:180315. Chr.27: QTL:180338. QTL for Milk fat percentage reported for chromosome(s): Chr.3: QTL:180139. Chr.5: QTL:180160. Chr.11: QTL:180208, QTL:180224. Chr.14: QTL:180245. Chr.19: QTL:180286. Chr.22: QTL:180318. Chr.26: QTL:180330. Chr.27: QTL:180339. QTL for Milk protein percentage reported for chromosome(s): Chr.3: QTL:180140, QTL:180144. Chr.5: QTL:180157. Chr.6: QTL:180180. Chr.14: QTL:180239. Chr.16: QTL:180266. Chr.21: QTL:180309. Chr.22: QTL:180317. Chr.24: QTL:180326. QTL for Milk citrate content reported for chromosome(s): Chr.3: QTL:180145. Chr.4: QTL:180155. Chr.6: QTL:180195. Chr.11: QTL:180226. Chr.14: QTL:180257. Chr.20: QTL:180308. Chr.26: QTL:180336. QTL for Milk calcium content reported for chromosome(s): Chr.4: QTL:180151, QTL:180156. Chr.6: QTL:180190, QTL:180194. Chr.7: QTL:180203. Chr.14: QTL:180254. Chr.18: QTL:180283. Chr.19: QTL:180294. Chr.20: QTL:180305. Chr.21: QTL:180311. Chr.25: QTL:180329. Chr.29: QTL:180353. QTL for Milk beta-casein percentage reported for chromosome(s): Chr.6: QTL:180161, QTL:180170, QTL:180185. Chr.11: QTL:180220. Chr.17: QTL:180278. QTL for Milk alpha-lactalbumin percentage reported for chromosome(s): Chr.6: QTL:180167, QTL:180181. Chr.11: QTL:180216. Chr.14: QTL:180240. Chr.20: QTL:180298. QTL for Milk beta-lactoglobulin percentage reported for chromosome(s): Chr.6: QTL:180182. Chr.11: QTL:180217. Chr.14: QTL:180241. QTL for Milk whey protein percentage reported for chromosome(s): Chr.6: QTL:180188. Chr.7: QTL:180202. Chr.11: QTL:180223. QTL for Milk myristic acid content reported for chromosome(s): Chr.6: QTL:180189. Chr.12: QTL:180228. Chr.13: QTL:180235. Chr.14: QTL:180250. Chr.19: QTL:180289. Chr.29: QTL:180352. QTL for Milk palmitic acid content reported for chromosome(s): Chr.10: QTL:180204. Chr.11: QTL:180209. Chr.14: QTL:180251. Chr.20: QTL:180303. Chr.26: QTL:180334. Chr.27: QTL:180344. QTL for Milk polyunsaturated fatty acid content reported for chromosome(s): Chr.10: QTL:180205. Chr.14: QTL:180249. Chr.16: QTL:180270. Chr.27: QTL:180343. QTL for Milk monounsaturated fatty acid content reported for chromosome(s): Chr.12: QTL:180227. Chr.13: QTL:180231. Chr.14: QTL:180247. Chr.16: QTL:180268. Chr.19: QTL:180288. Chr.26: QTL:180332. Chr.27: QTL:180341. QTL for Milk stearic acid content reported for chromosome(s): Chr.13: QTL:180232. Chr.14: QTL:180252. Chr.19: QTL:180290. Chr.20: QTL:180304. Chr.27: QTL:180345. QTL for Milk oleic acid content reported for chromosome(s): Chr.13: QTL:180233. Chr.14: QTL:180253. Chr.16: QTL:180271. Chr.19: QTL:180291. Chr.26: QTL:180335. Chr.27: QTL:180346. QTL for Milk saturated fatty acid content reported for chromosome(s): Chr.14: QTL:180246. Chr.16: QTL:180267. Chr.19: QTL:180287. Chr.26: QTL:180331. Chr.27: QTL:180340. QTL for Milk unsaturated fatty acid content reported for chromosome(s): Chr.14: QTL:180248. Chr.16: QTL:180269. Chr.26: QTL:180333. Chr.27: QTL:180342. QTL/association Reported by chromosomes: Chr.1 (7), Chr.2 (8), Chr.3 (9), Chr.4 (11), Chr.5 (4), Chr.6 (33), Chr.7 (8), Chr.10 (2), Chr.11 (21), Chr.12 (4), Chr.13 (5), Chr.14 (24), Chr.15 (2), Chr.16 (16), Chr.17 (6), Chr.18 (3), Chr.19 (12), Chr.20 (12), Chr.21 (5), Chr.22 (8), Chr.24 (6), Chr.25 (2), Chr.26 (7), Chr.27 (11), Chr.28 (1), Chr.29 (7). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Sanchez MP, Ramayo-Caldas Y2, Wolf V, Laithier C, El Jabri M, Michenet A, Boussaha M, Taussat S, Fritz S, Delacroix-Buchet A, Brochard M, Boichard D (2019). Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows. Genetics, Selection, Evolution : GSE, 51(1): 34; Curated into QTLdb on 2019-10-21. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=IvMy5V2KzS

Sanchez MP, Ramayo-Caldas Y2, Wolf V, Laithier C, El Jabri M, Michenet A, Boussaha M, Taussat S, Fritz S, Delacroix-Buchet A, Brochard M, Boichard D (2019). Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows. Genetics, Selection, Evolution : GSE, 51(1): 34; DOI: https://dx.doi.org/10.1186/s12711-019-0473-7

Publication # 31262251 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: