o SNP_60K_build10.2_final.txt
- Pig 60K SNP data set
- Mapping info by Martien Groenen et al [Martien.groenenwur.nl]
o Affy_2005_blast.gff
- 23935 sequences
- 19351 sequences mapped
o Affy_2010_blast.gff
- 40139 sequences (47769 SNOWBALL elements + 2370 miRNA seqs)
- 34809 sequences mapped
o pig_Oligo2build10.2.gff
- 18224 consensus sequences from http://www.PigOligoArray.ORG/
- 16653 sequences mapped
Blast mapping criteria:
Cut-off e-value: 1e-3; Identity > 80%; Alignment length > 30bp
__Zhiliang
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