o SNP_pos_build10.2_final.txt
- Pig 60K SNPs mapping data by Martien Groenen et al [Martien.groenen wur.nl]
o SNP_pos_build10.2_final.gff
- GFF format of Martien's Pig 60K SNPs mapping data for GBrowse.
o human.refseq2build10.2.gff *
- 4,735 human refseq sequences (combined fasta sequence files
from ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/)
- 4,730 sequences mapped
o Affy_2005_blast.gff *
- 23935 sequences
- 19351 sequences mapped
o Affy_2010_blast.gff *
- 40139 sequences (47769 SNOWBALL elements + 2370 miRNA seqs)
- 34809 sequences mapped
o pig_Oligo2build10.2.gff *
- 18224 consensus sequences from http://www.PigOligoArray.ORG/
- 16653 sequences mapped
* Blast mapping criteria (ref. Zhiliang):
E-value < 1e-3; Identity > 80%; Minimum alignment length > 30bp
(Where credits is not listed, the mapping data set is by Zhiliang Hu
of the NAGRP Bioinformtics Team).
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