Pig genome 10.2: custom mapping results
Data Repository
Name Size Time Last Modified
SNP_pos_build10.2_final.gff5.2 MB2012-12-13 13:12:41
SNP_pos_build10.2_final.txt1.75 MB2012-04-18 17:19:21
human.refseq2build10.2.gff.gz198.79 KB2012-06-04 17:46:42
pigAffy2005.mapping.blast.gff2.09 MB2012-02-13 17:53:05
pigAffy2010.mapping.blast.gff3.71 MB2012-05-28 11:47:43
pig_Oligo2build10.2.gff1.67 MB2012-04-30 21:57:21
 o SNP_pos_build10.2_final.txt
   - Pig 60K SNPs mapping data by Martien Groenen et al [Martien.groenenwur.nl]

 o SNP_pos_build10.2_final.gff
   - GFF format of Martien's Pig 60K SNPs mapping data for GBrowse.

 o human.refseq2build10.2.gff *
   - 4,735 human refseq sequences (combined fasta sequence files
           from ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/)
   - 4,730 sequences mapped

 o Affy_2005_blast.gff *
   - 23935 sequences
   - 19351 sequences mapped

 o Affy_2010_blast.gff *
   - 40139 sequences (47769 SNOWBALL elements + 2370 miRNA seqs)
   - 34809 sequences mapped

 o pig_Oligo2build10.2.gff *
   - 18224 consensus sequences from http://www.PigOligoArray.ORG/
   - 16653 sequences mapped

   * Blast mapping criteria (ref. Zhiliang):
     E-value < 1e-3; Identity > 80%; Minimum alignment length > 30bp

(Where credits is not listed, the mapping data set is by Zhiliang Hu
of the NAGRP Bioinformtics Team).


Web Access Statistics © 2003-2013 NAGRP - Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team
Helpdesk