Data sources/credits:
BOVINEHD_rs_111105.csv.gz
- 770K HD SNP chip; rs/ss numbers (Cattle High Density SNP Chip
Consortium; file sent by Robert Schnabel [schnabelr missouri.edu])
BTA4_masked.tgz
- Contributed by Dave Adelson [david.adelson adelaide.edu.au]
- ( http://genomes.sapac.edu.au/bovine_pub/ )
ILumina_770K_nonagreement_markers.xlsx
- 770K ILumina HD SNPs - structural genomics analysis
Contributed by James Reecy [ jreecy iastate.edu ]
Repeats_in_assembly_3.1.tgz
- Contributed by Dave Adelson [david.adelson adelaide.edu.au]
- ( http://genomes.sapac.edu.au/bovine_pub/ )
Genome_Builds_gff
- GFF files of BTAU4 assembly
- GFF files of UMD3 assembly
UMD3.1_masked.tgz
- Contributed by Dave Adelson [david.adelson adelaide.edu.au]
- ( http://genomes.sapac.edu.au/bovine_pub/ )
UMD3_56ksnps.gff
- Converted from "BovPortfoliCoord_20100801" data file forwarded
by Jim Reecy. __Zhiliang
UMD3_RepeatMasked.tar.gz
- Contributed by Lakshmi Matukumalli [lmatukum anri.barc.usda.gov]
- ( http://bfgl.anri.barc.usda.gov/tmp/UMD3_RepeatMasked.tar.gz )
UMD3_chr.gff.tar.gz
- Converted from NCBI UMD3 data (http://eutils.ncbi.nlm.nih.gov)
with Bioperl scripts. __Zhiliang
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