Cattle Genome Analysis Data Repository
Data Repository
Name Size Time Last Modified
BOVINEHD_rs_111105.csv.gz9.55 MB2011-11-06 08:11:18
BTA4_masked.tgz1.13 GB2010-05-24 08:29:48
Genome_Builds_fasta4 KB2012-01-10 14:59:33
Genome_Builds_gff4 KB2012-01-10 13:56:48
ILumina_770K_nonagreement_markers.xlsx92.76 KB2011-12-02 16:19:17
Repeats_in_assembly_3.1.tgz1.31 MB2010-05-24 08:25:04
UMD3.1_masked.tgz899.08 MB2010-05-24 08:24:09
UMD3_56ksnps.gff4.84 MB2011-01-23 21:12:19
UMD3_RepeatMasked.tar.gz970.2 MB2009-10-29 13:17:14
UMD3_chr.gff.tar.gz770.35 MB2010-12-16 17:10:19
Data sources/credits:

BOVINEHD_rs_111105.csv.gz
 - 770K HD SNP chip; rs/ss numbers (Cattle High Density SNP Chip
   Consortium; file sent by Robert Schnabel [schnabelrmissouri.edu])

BTA4_masked.tgz
 - Contributed by Dave Adelson [david.adelsonadelaide.edu.au]
 - ( http://genomes.sapac.edu.au/bovine_pub/ )

ILumina_770K_nonagreement_markers.xlsx
 - 770K ILumina HD SNPs - structural genomics analysis
   Contributed by James Reecy [ jreecyiastate.edu ]

Repeats_in_assembly_3.1.tgz 
 - Contributed by Dave Adelson [david.adelsonadelaide.edu.au]
 - ( http://genomes.sapac.edu.au/bovine_pub/ )

Genome_Builds_gff
 - GFF files of BTAU4 assembly
 - GFF files of UMD3 assembly

UMD3.1_masked.tgz
 - Contributed by Dave Adelson [david.adelsonadelaide.edu.au]
 - ( http://genomes.sapac.edu.au/bovine_pub/ )

UMD3_56ksnps.gff
 - Converted from "BovPortfoliCoord_20100801" data file forwarded
   by Jim Reecy.  __Zhiliang

UMD3_RepeatMasked.tar.gz
 - Contributed by Lakshmi Matukumalli [lmatukumanri.barc.usda.gov]
 - ( http://bfgl.anri.barc.usda.gov/tmp/UMD3_RepeatMasked.tar.gz )

UMD3_chr.gff.tar.gz
 - Converted from NCBI UMD3 data (http://eutils.ncbi.nlm.nih.gov)
   with Bioperl scripts.    __Zhiliang


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