Blast Evaluate Assembly 9b

Or load it from disk

Blast program blastn blastp blastx tblastn tblastx Target database Sscrofa_9b_SSall.fa Sscrofa_9b_SS1.fa Sscrofa_9b_SS2.fa Sscrofa_9b_SS3.fa Sscrofa_9b_SS4.fa Sscrofa_9b_SS5.fa Sscrofa_9b_SS6.fa Sscrofa_9b_SS7.fa Sscrofa_9b_SS8.fa Sscrofa_9b_SS9.fa Sscrofa_9b_SS10.fa Sscrofa_9b_SS11.fa Sscrofa_9b_SS12.fa Sscrofa_9b_SS13.fa Sscrofa_9b_SS14.fa Sscrofa_9b_SS15.fa Sscrofa_9b_SS16.fa Sscrofa_9b_SS17.fa Sscrofa_9b_SS18.fa Sscrofa_9b_SSX.fa Sscrofa_9b_SSY.fa Sus_assem_9.56 Sus_assem_9.56_RpeatMasked Sus_assem_9.58

Options:

Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF Other advanced options:

Format

Descriptions 0 10 50 100 250 500 Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6