What's New on the NAGRP Animal Genome Web Site
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May 22, 2012 (03:20AM CDT)
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New or modified pages in the last 30 days
- May 21, 2012 (16:22) - http://www.animalgenome.org/blast
- May 21, 2012 (12:44) - http://www.animalgenome.org/community/mail/view (5)
- May 21, 2012 (12:03) - http://www.animalgenome.org/news (4)
- May 21, 2012 (10:07) - http://www.animalgenome.org/community/liststata
- May 19, 2012 (22:43) - http://www.animalgenome.org/bioinfo/tools/expeditor (9)
- May 18, 2012 (09:36) - http://www.animalgenome.org/pig/projects/array_annotatn/README (14)
- May 16, 2012 (16:05) - http://www.animalgenome.org/pig/index
- May 16, 2012 (00:25) - http://www.animalgenome.org/community/meetings
- May 15, 2012 (16:03) - http://www.animalgenome.org/bioinfo/services/index (10)
- May 15, 2012 (12:02) - http://www.animalgenome.org/pig/genome/db
- May 13, 2012 (17:28) - http://www.animalgenome.org/aquaculture/newsletters/activity (2)
- May 9, 2012 (11:07) - http://www.animalgenome.org/bioinfo/index (12)
- May 5, 2012 (12:52) - http://www.animalgenome.org/bioinfo/updates/index (11)
- May 4, 2012 (15:36) - http://www.animalgenome.org/bioinfo/tools/index
- Apr 30, 2012 (16:58) - http://www.animalgenome.org/aquaculture/newsletters/No.30 (8)
- Apr 29, 2012 (22:28) - http://www.animalgenome.org/community/discuss
- Apr 27, 2012 (15:34) - http://www.animalgenome.org/community/angenmap/faq (2)
- Apr 26, 2012 (13:00) - http://www.animalgenome.org/QTLdb/tools/qb
- Apr 25, 2012 (15:07) - http://www.animalgenome.org/QTLdb/notes (2)
- Apr 23, 2012 (20:40) - http://www.animalgenome.org/gbrowse/index (2)
* Red number in parenthesis indicates multiple updates in the area represented by that URL [May 21, 2012-May-21 (17:03PM CDT)]
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Major updates / permanent additions: |
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| The developmental Pig Genome
Database is open to public to trial use |
| New, May 16, 2012 |
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Pig OligoArray elements are blast mapped to pig genome build 10.2 |
| New, Apr 30, 2012 |
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What's new on the NAGRP animal genome web site (#2, 2012) |
| New, Apr 23, 2012 |
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New cattle 770k HD SNP and 64k SNP chip annotations are shared by James Koltes. |
| New, Mar 25, 2012 |
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QTLdb: The QTL map locations conversion (cM to bp) algorithms is improved |
| Update, Mar 15, 2012 |
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QTLdb: Users can now search multiple QTL for targeted alignments and meta-plots |
| New, Feb 28, 2012 |
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The CRI-MAP Improvement Consortium web site "downloads" area is upgraded for users to upload and share their contributions. |
| New, Feb 21, 2012 |
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A "SheepModels" listserv mailing list is set up |
| New, Feb 08, 2012 |
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Affy array elements are blast mapped to pig genome build 10.2 |
| New, Feb 02, 2012 |
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Qinghua Nie (nqinghua@iastate.edu) posted a data file to share with the chicken genome community: Multisites_contigs_unigenes.xlsx |
| New, Feb 01, 2012 |
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More defined search phrase can now be used for better targeted literature search within QTLdb |
| New, Feb 1, 2012 |
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NRSP-8 Aquagenomics, Pig genomics, and Bioinformatics Coordination annual reports are posted. Check respective web pages for details. |
| New, Jan 16, 2012 |
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Web site modified to reflect the change of NAGRP "Sheep" to "Sheep/Goat" Genome Coordination Program |
| New, Jan 15, 2012 |
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QTLdb: QTL trait hierarchy browse are improved to allow better QTL data and reference overview by trait types as well as by traits |
| New, Jan 14, 2012 |
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What's new on the NAGRP animal genome web site (#1, 2012) |
| New, Jan 05, 2012 |
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New function added: easy reference list for all QTL within a chromosomal view window |
| New, Dec 18, 2011 |
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Three more items in AnGenMap FAQ: How to write effective emails on AnGenMap, etc. |
| New, Dec 6, 2011 |
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770K ILumina HD SNPs structural genomics analysis data posted by James Reecy |
| New, Dec 2, 2011 |
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AUGUSTUS pig gene predictions by Henrik Hornshoj et al are placed on GBrowse |
| New, Dec 1, 2011 |
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Genome maps can be ported to QTLdb for Mbp map based QTL/eQTL/association (GWAS) data |
| New, Nov 28, 2011 |
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ATO/QTL traits are now linked to VT/PT/CMO to stadardize the trait nomenclature |
| New, Nov 14, 2011 |
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The cattle 770K High Density SNPs "rs/ss" dbSNP IDs are posted by Robert Schnabel. |
| New, Nov 6, 2011 |
Annotated cattle genes on UMD 3.1 is available on Biomart
| New, Oct 30, 2011 | |
New GBrowse tracks are added for 8.4M cattle SNPs and 3M chicken SNPs from dbSNP.
| New, Oct 25, 2011 | |
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What's new on the NAGRP animal genome web site (#3, 2011) |
| New, Sep 23, 2011 |
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New item in AnGenMap FAQ: platform to share non-plain-text files for AnGenMap emails. |
| New, Aug 31, 2011 |
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SNPlotz: Horse 54k SNP chip data is added to the SNPlotz |
| Update, Aug 16, 2011 |
Horse GBrowse tracks are updated with 54k/74k SNPs, 3k RH and 10k STS markers data.
| New, Jul 11, 2011 | |
A developmental pig genome database is created; On-going progress are being made.
| New, Jun 6, 2011 | |
Experimental Biomart is setup to serve multiple species
| New, May 19, 2011 | |
The BEAP program is modified to assist users for easy setup. See its manual for details.
| Update, May 11, 2011 | |
The NAGRP data repository is expanded to host supplementary data for publications.
| New, May 8, 2011 | |
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Updated pig genome assembly 10 is available for blast on NAGRP server |
| Update, Apr 28, 2011 |
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What's new on the NAGRP animal genome web site (#2, 2011) |
| New, Apr 23, 2011 |
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Cattle QTL alignment for UMD 3.1 build are available for download and visulization in GBrowse |
| New, Apr 21, 2011 |
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New GBrowse track is added for the Chicken 60K SNP chip aligning with genes/QTL/etc |
| New, Apr 20, 2011 |
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SNPlotz: Improved to allow user keep own upload files for customized plot/re-analysis |
| New, Apr 6, 2010 |
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QTLdb chromosomal viewer is improved to include a list of traits for browsing |
| New, Mar 8, 2011 |
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Expeditor tools are updated to meet the new Ensembl gene structure view |
| Update, Mar 2, 2011 |
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Rainbow trout 2nd generation genetic map is updated with 1465 markers |
| Update, Feb 24, 2011 |
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Aquaculture genome database links are updated |
| New, Feb 1, 2011 |
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Catfish pseudo-chromosomes are on GBrowse |
| New, Jan 12, 2011 |
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What's new on the NAGRP animal genome web site (#1, 2011) |
| New, Jan 10, 2011 |
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A web form is set up to serve as a window to the Site Helpdesk |
| New, Jan 9, 2010 |
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A platform for NAGRP members to share files individually or with the community |
| New, Jan 7, 2010 |
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New SNP datatypes are added to the GFF Data Formattor tool |
| Updated, Dec 21, 2010 |
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Pig genome preliminary assembly 9.2 is in the GBrowse to align with QTL and SNPs |
| New, Dec 15, 2010 |
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Cattle UMD 3.1 assembly is included in the GBrowse |
| New, Dec 10, 2010 |
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Cytogenetic G-banded chromosome ideogram are added to QTLdb maps for all species |
| New, Nov 16, 2010 |
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QTL data are now exported also in BED format for download |
| New, Nov 4, 2010 |
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Two QTL meta-plot tools are added to help users for their QTL meta-analysis. |
| New, Oct 31, 2010 |
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NAGRP Data Repository for Community Members to Share Their Genome Analysis Data |
| New, Oct 23, 2010 |
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Sheep QTLdb is set up, joining the the Animal QTLdb family with three more other species |
| New, Oct 01, 2010 |
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What's new on NAGRP animal genome web site (#3, 2010) |
| New, Sep 27, 2010 |
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Pig genome assembly 10 is released and available on the NAGRP bioinformatics blast server |
| New, Sep 22, 2010 |
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Release 12 of the Animal QTLdb has been made public, with addition of 1,065 new QTL |
| Updated, Sep 13, 2010 |
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Rainbow trout transcriptome characterized and put on NAGRP Blast Server |
| New, Jul 15, 2010 |
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Blast Evaluate Pig Assembly 9b |
| New, May 30, 2010 |
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The Animal QTLdb FAQ are updated to explain that the QTL_ID is stable |
| Updated, May 16, 2010 |
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An improvement is made to the CateGOrizer to show the child GO:ids on each class |
| Update, May 6, 2010 |
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What's new on NAGRP animal genome web site (#2, 2010) |
| New, Apr 27, 2010 |
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Release 11 of the Animal QTLdb has been made public, with addition of 1,643 new QTL |
| Updated, Apr 23, 2010 |
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The CateGOrizer is improved to better process very large data set |
| Update, Apr 7, 2010 |
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Animal QTLdb frequently asked questions is updated with new items |
| Updated, Mar 23, 2010 |
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QTL data are now exported also in SAM format for free download |
| New, Mar 5, 2010 |
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GFF3 File formatter: A generic web tool to convert own mapping data into GFF3 format |
| New, Feb 20, 2010 |
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QTL data link to NCBI Entrez Gene Database is automatically synchronized |
| New, Jan 30, 2010 |
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What's new on NAGRP animal genome web site (#1, 2010) |
| New, Jan 04, 2009 |
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Release 10 of the Animal QTLdb has been made public, with addition of 1,281 new QTL |
| Updated, Dec 30, 2009 |
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Pig genome assembly v.9 on GBrowse: Sequenced BACs, Predicted genes, QTL, etc. |
| New, Dec 28, 2009 |
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The current (developing) vertebrate trait ontology can now be viewed via AmiGO |
| New, Dec 11, 2009 |
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SNPlotz: Improved for users to use Gensel or Illumina SNP IDs in their data set |
| Update, Nov 24, 2009 |
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The CateGOrizer is improved to allow users to add their annotations to a data set |
| Update, Nov 2, 2009 |
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Animal QTLdb: Mechanism is established to port data to NCBI Gene Database |
| New, Oct 22, 2009 |
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Striped Bass Ovarian Transcriptome Sequence Contigs Database is set up |
| New, Oct 13, 2009 |
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What's new on NAGRP animal genome web site (#3, 2009) |
| New, Sep 22, 2009 |
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Animal QTLdb: Release 9 with significant more data added |
| Update, Sep 15, 2009 |
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NEW: Virtual Comparative Map (VCMap) |
| New, Aug 23, 2009 |
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SNPlotz: A genome plot tool for SNP association studies |
| New, Jun 14, 2009 |
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The rainbow trout 2nd generation genetic map is put on-line |
| New, May 30, 2009 |
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The Cow Hits the News |
| New, Apr 24, 2009 |
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What's new on NAGRP animal genome web site (#2, 2009) |
| New, Apr 20, 2009 |
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NCBI horse genome information are ported to GBrowse for alignment display |
| New, Mar 31, 2009 |
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Partial pig genome information from Sanger are updated into GBrowse |
| New, Mar 28, 2009 |
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Bovine 50K SNP chip elements are aligned with cattle genome with GBrowse |
| New, Feb 27, 2009 |
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Animal QTLdb data may be downloaded in .gff format for external analysis such as UCSC |
| New, Jan 31, 2009 |
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What's new on NAGRP animal genome web site (#1, 2009) |
| New, Jan 06, 2009 |
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QTLdb species main pages and FAQ page are updated
to reflect recently added functions |
| New, Jan 06, 2009 |
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Data download is made possible on Animal QTLdb |
| New, Dec 15, 2008 |
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AmiGO is setup for Animal Trait Ontology browse and search |
| New, Nov 18, 2008 |
