[GENERAL] description = C. elegans Core Annotations db_adaptor = Bio::DB::SeqFeature::Store db_args = -adaptor memory -dir "/usr/local/apache/doc/gbrowse/databases/elegans_core" plugins = Aligner RestrictionAnnotator GFFDumper aggregators = EST_match{EST_match} gene{CDS,five_prime_UTR,three_prime_UTR/mRNA} # options drag and drop = 1 balloon tips = 1 titles are balloons = 1 # list of tracks to turn on by default default features = Transcripts Alignments DNA # examples to show in the introduction examples = C01F4 # feature to show on startup initial landmark = C01F4 # "automatic" classes to try when an unqualified identifier is given automatic classes = gene mRNA EST_match # a footer footer =
For the source code for this browser, see the Generic Model Organism Database Project. For other questions, send mail to lstein@cshl.org.

$Id: elegans_core.conf,v 1.2.14.2 2008/05/29 15:24:14 lstein Exp $
# Various places where you can insert your own HTML -- see configuration docs html1 = html2 = html3 = html4 = html5 = html6 = # what image widths to offer image widths = 450 640 800 1024 # default width of detailed view (pixels) default width = 800 # Web site configuration info stylesheet = /gbrowse/gbrowse.css buttons = /gbrowse/images/buttons tmpimages = /gbrowse/tmp # max and default segment sizes for detailed view max segment = 50000 default segment = 5000 # zoom levels zoom levels = 100 200 1000 2000 5000 10000 20000 40000 # colors of the overview, detailed map and key overview bgcolor = lightgrey detailed bgcolor = lightgoldenrodyellow key bgcolor = beige ######################## # Default glyph settings ######################## [TRACK DEFAULTS] glyph = generic height = 10 bgcolor = lightgrey fgcolor = black font2color = blue label density = 25 bump density = 100 # where to link to when user clicks in detailed view link = AUTO ################## TRACK CONFIGURATION #################### # the remainder of the sections configure individual tracks ########################################################### [Genes] feature = gene glyph = gene height = 8 bgcolor = blue description = 1 key = Protein-coding genes [Alignments] feature = EST_match:BLAT_EST_BEST glyph = segments height = 7 draw_target = 1 show_mismatch = 1 bgcolor = sub { my $feature = shift; my $name = $feature->display_name; if ($name =~ /\.5$/) { return 'red'; } else { return 'orange'; } } canonical_strand = 1 group_pattern = /\.[53]$/ key = ESTs [DNA] glyph = dna global feature = 1 height = 40 do_gc = 1 gc_window = auto fgcolor = red axis_color = blue strand = both key = DNA/GC Content