Animal Genome Tracks on GBrowse

Genome track alignments using GBrowse on this site are featured with (1) Annotated and predicted genes and transcripts; (2) QTL tracks; (3) Various SNP Chip tracks.
  • Catfish Contigs — Part of cBARBEL (Auburn Univ.)
  • Catfish Physical Map — Part of cBARBEL (Auburn Univ.)
  • Catfish pseudo-chromosomes — Part of cBARBEL (Auburn Univ.)
  • Cattle — Btau4.2: Genes, Trascripts, QTL, SNPs; etc.
  • Cattle — UMD_3.1: Genes, Trascripts, QTL, SNPs; etc.
  • Chicken I — Mirror of Gallus GBrowse from Univ. of Delaware.
  • Chicken II — Gallus_gallus-2.1, NCBI data; QTL; etc.
  • Horse — EquCab2, NCBI data. 54k/74k SNPs, 3k RH and 10k STS markers.
  • Pig I — Assembly 10.2, current build. Custom tracks are being added ...
  • Pig II — Assembly 9.2, NCBI gene model - 2010; QTLs, SNPs, etc.
  • Pig III — Assembly 9, Enseml/Havana genes - 2009; BACs, QTL, SNP, etc.
  • Zebrafish — Chromosomes 1-25 (Auburn Univ.)
Other GBrowse sites that also hosts livestock species genome tracks:
  1. Atlantic salmon (AsalBase)
  2. Cattle Genome Browser at the Georgetown University (formerly at Texas A&M)
  3. Cattle Illumina 87 (Africander) Reads on UMD build, CSIRO, Australia
  4. Cattle Genome UMD3 Build, CSIRO, Australia
  5. Cattle (BTAU 4) Genome @ ReproGen, University of Sydney
  6. Cattle Polymorphism Browser at NCI-Frederick
  7. Chicken Genome Browser at the University of Delaware
  8. Horse Polymorphism Browser at NCI-Frederick
  9. Sheep Virtual Genome Browser - CSIRO
  10. Sheep Real Genome Browser 1.0 - CSIRO
  11. Sheep Real Genome Browser 2.0 - CSIRO
  12. Sheep (Oaries) @ ReproGen, University of Sydney
  13. Turkey Genome at the Birdbase
  14. Water Buffalo (Bubalus bubalis) Genome Browser (at NBAGR, India)
  15. Zebra Finch Genome at University of Delaware

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