Frequently Used: User Manuals, Guides, Tutorials

Manuals

  1. ASReml user guides
  2. ABYSS
  3. BEDTools
  4. Blat: Program Specifications and User Guide
  5. Blast: program options and helps
  6. Blast+ (new): User manual
  7. BRAT
  8. Blastz: a genome sequence alignment program
  9. BWA { BWA Tutorials: 1, 2 }
  10. CAP3 (General helps | Assembly | Improved)
  11. Carthagene
  12. Clustalw: README
  13. CRI-MAP (Documentation | Home Page | Tutorial)
  14. ContigImage
  15. e-PCR | me-PCR
  16. Exonerate
  17. fastPHASE (Abstract)
  18. Long Horn Array DB
  19. MEGAN
  20. map2GO_slim
  21. miranda - find miRNA sites
  22. MPIblast
  23. PHASE ( web, FAQ, etc.)
  24. Otterlace ( Guidelines | User Manual )
  25. Oases
  26. Primer3: README
  27. RepeatMasker
  28. R
  29. REPCLASS (cluster computer)
  30. RepeatScout (cluster computer)
  31. RHmapper
  32. SamTools
  33. Shore
  34. Velvet
  35. For RNA works:
    Bowtie (Manual | Tutorial) | Cistematic | SamTools
  36. Sibs: README
  37. SOAPdenovo
  38. WU-Blast: Topics
  39. XPLCR"

Tutorials

  1. BioPerl
  2. Crimap (an anatomy | a tour)
  3. OMIM
  4. GBrowse Users Tutorial
  5. GBrowse Admin Tutorial
  6. GBrowse Configurations
  7. DNA Sequence Analysis: GCG
  8. DNA Sequence Analysis: Staden
  9. Plink: Whole genome association analysis toolset

File formats

Links

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Contact: NAGRP Bioinformatics Team 		::Helpdesk::