NAGRP Bioinformatics Projects

  1. Expeditor: A Pipeline for Designing Primers Using Human Gene Structure and Livestock Animal EST Information
    • Status: Success; Published (Journal of Heredity, 96(1):80-82, January 2005)

  2. PigQTLdb: A QTL Resource and Comparison Tool for Pigs
    • Status: Success; Published (Mammalian Genome, 16(10):792-800, October 2005)

  3. PigQTLdb Extension: Genome-wide Alignment of BAC FPC Maps and RH Maps for QTL Positional Gene Mining

  4. Animal QTLdb: Evolved from PigQTLdb, a QTL database that contains data from cattle, chikcens and pigs.
    • Status: Success; Published (Nucleic Acids Research, 2007, 35:D604-D609)

  5. NAGRP Blast Server: NAGRP Blast Server with NCBI Blast Suite; An Automated Mechanism to Update the Sequence Databases Daily, Weekly, or Monthly Depending on the Data Sets.
    • Status: Success; Serving on-line since November 2004.

  6. AnGenMap Mail Archive: Migration of AnGenMap Mail Archive from Flat Files to MySQL Database
    • Status: Success; Serving on-line since May 2005.

  7. Crittenden Genomics References: Migration of Crittenden Genomics References Archive from Flat Files to MySQL Database
    • Status: Success; Serving on-line since March 2005.

  8. Genetic Software db: Genetic Analysis Software Database
    • Status: Initial success; Serving on-line since August 2005. (Abstract to PAG-XIV, San Diego, CA, January 14-18, 2006)

  9. Events manager: Public Web Tool for Community Events Updates - Conferences, Meetings, Workshops
    • Status: Success; Serving on-line since May 2005.

  10. AquaGenomics Community Directory: An Interactive On-line Directory for the AquaGenomics Research Community.
    • Status: Success; Serving on-line since November 2005. Publications archive function added to the Directory in February 2006.

  11. Developing Frameworks and Tools for Animal Trait Ontology (ATO)

  12. Tool Box: A collection of small Bioinformatics Tools developed by the NAGRP Bioinformatics Team.
    • Status: Active; Serving on-line since January 2006.

  • Our team.

  • Our recent publications.

    You are welcome to suggest new projects or request for new services that may benefit the whole NAGRP community. Please feel free to contact our Bioinformatics Team.

    • Web Access Statistics © 2003-2008 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team     		May 12, 2008 (Monday)