NAGRP Aquaculture Genome Projects

ESTs and Microarrays

3The TIGR rainbow trout gene index
The TIGR Atlantic salmon gene index
NCBI rainbow trout Unigene
NCBI Atlantic salmon Unigene
• A Comprehensive Survey of the Genes Involved in Maturation and Development of the Rainbow Trout Ovary. Von Schalburg KR, Rise ML, Brown GD, Davidson WS, Koop BF.

• Identification of immune-relevant genes from Atlantic salmon using suppression subtractive hybridization. 2004. Tsoi SCM, Ewart KV, Penny S, Melville, K, Liebsher RS, Brown LL, Douglas SE. Marine Biotechnology 6:199-214.

• Analysis of genes isolated from lipopolysaccharide-stimulated rainbow trout (Oncorhynchus mykiss) macrophages. 2004 Goetz FW, Iliev DB, McCauley LA, Liarte CQ, Tort LB, Planas JV, Mackenzie S. Molecular Immunology 41(12) 1199-1210.

• Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. 2004. Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SR, Smailus DE, Jones SJ, Schein JE, Marra MA, Butterfield YS, Stott JM, Ng SH, Davidson WS, Koop BF. Genome Res. 14(3):478-90.

• Sequence analysis of a rainbow trout cDNA library and creation of a gene index. 2003. Rexroad CE 3rd, Lee Y, Keele JW, Karamycheva S, Brown G, Koop B, Gahr SA, Palti Y, Quackenbush J. Cytogenet Genome Res. 102(1-4):347-54.

• EST-based identification of genes expressed in the liver of adult Atlantic salmon (Salmo salar). 2002. Martin SA, Caplice NC, Davey GC, Powell R. Biochem Biophys Res Commun. Apr 26;293(1):578-85.

• A survey of genes in the Atlantic salmon (Salmo salar) as identified by expressed sequence tags. 2001. Davey GC, Caplice NC, Martin SA, Powell R. Gene. Jan 24;263(1-2):121-30