References:

Related Papers and Abstracts:

Zhiliang Hu and Max Rothschild (2003). A Frame-Work for Developing the Pig QTL Database. (The 13th North American Colloquium on Animal Cytogenetics & Gene Mapping. Louisville, Kentucky, July 13-17, 2003). Cytogenet Genome Res 102:357.
Zhiliang Hu, Svetlana Dracheva, Wonhee Jang, Donna Maglott, John Bastiaansen, Max F. Rothschild and James M. Reecy (2005). PigQTLdb: A Pig QTL Database. Plant & Animal Genome XIV Conference, San Diego, CA, January 15-19, 2005
Zhiliang Hu, Svetlana Dracheva, Wonhee Jang, Donna Maglott, John Bastiaansen, Max F. Rothschild and James M. Reecy (2005). A QTL resource and comparison tool for pigs: PigQTLDB. Mammalian Genome. 16(10):792-800.
Zhiliang Hu, Sean Humphray, Carol Scott, Stacey N. Meyers, Jane Rogers, Max F. Rothschild and James M. Reecy (2006). "Extension of PigQTLdb: Genome-wide Alignment of BAC FPC Maps and RH Maps for QTL Positional Gene Mining". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006
Zhiliang Hu, Eric Ryan Fritz and James M. Reecy (2007). AnimalQTLdb: A Livestock QTL Database Tool Set for Positional QTL Information Mining and Beyond. Nucleic Acids Research, 2007, 35(Database issue):D604-D609; doi:10.1093/nar/gkl946.
Zhiliang Hu, Eric Ryan Fritz and James M. Reecy (2007). "Computer Demo: A Public Platform for QTL Comparisons and Integration with Diverse Types of Structural Genomic Information". Plant & Animal Genome XV Conference, San Diego, CA, January 13-17, 2007
Zhiliang Hu and James M. Reecy (2007). Animal QTLdb: Beyond a Repository - A Public Platform for QTL Comparisons and Integration with Diverse Types of Structural Genomic Information. Mammalian Genome, 18: 1-4 (2007).

Other publications that have cited our work:

Fadiel, A., I. Anidi, and K.D. Eichenbaum (2005). Farm animal genomics and informatics: an update. Nucleic Acids Res. 2005; 33(19): 6308-6318.
Demeure, O., D. Pomp, D. Milan, M. F. Rothschild and C. K. Tuggle. (2005). Mapping of 443 porcine EST improves the comparative maps for SSC1 and SSC7 with the human genome. Animal Genetics, 36: 381.
K F Chen, C Knorr, K Bornemann-Kolatzki, J Ren, LS Huang, G A Rohrer, and B Brenig. (2005) Targeted oligonucleotide-mediated microsatellite identification (TOMMI) from large-insert library clones. BMC Genetics 2005, 6:54
Nonneman, D., T. P. L. Smith, B. A. Freking and G. A. Rohrer. (2005). Assignment of 12 genes to porcine chromosome 1 by linkage and radiation hybrid mapping. Animal Genetics, 36: 532.
Alistair G. Reid and Susan M. Gribble (2005). SmartCapture and the frontiers of FISH technology. Chromosome Research. Vol. 13(8), 835-838
W-S Liu, K. Eyer, H. Yasue, B. Roelofs, H. Hiraiwa, T Shimogiri, E. Landrito, and C. W. Beattie. (2005). A high-resolution radiation hybrid map for swine. J. Anim. Sci. Vol. 83, Suppl. 1/J. Dairy Sci. Vol. 88, Suppl. 1
J. Estelle, A. Mercade, J.L. Noguera, M. Perez-Enciso, C. Ovilo, A. Sanchez and J.M. Folch (2005) Effect of the porcine IGF2-intron3-G3072A substitution in an outbred Large White population and in an Iberian x Landrace cross J. Anim. Sci. 2005. 83:2723-2728
Martien A. M. Groenen (2005). Imprinted QTL in farm animals: a fortuity or a common phenomenon?. In: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, John Wiley & Sons, Ltd., Article Online Posting Date: November 15, 2005.
Wimmers, K., I. Fiedler, T. Hardge, E. Murani, K. Schellander and S. Ponsuksili (2006). QTL for microstructural and biophysical muscle properties and body composition in pigs." BMC Genetics 7:15.
Polineni P, Aragonda P, Xavier SR, Furuta R, Adelson DL (2006) The bovine QTL viewer: a web accessible database of bovine Quantitative Trait Loci. BMC Bioinformatics 2006, 7:283 (5 June 2006)
T. Shimogiri, S. Kiuchi, H. Hiraiwa, T. Hayashi, Y. Takano, Y. Maeda and H. Yasue (2006) Assignment of 117 genes from HSA5 to the porcine IMpRH map and generation of a dense human-pig comparative map. Animal Genetics, 37(5):503.
A. Tomas J. Casellas, O. Ramirez, G. Munoz J. L. Noguera, and A. Sanchez (2006) High amino acid variation in the intracellular domain of the pig prolactin receptor (PRLR) and its relation to ovulation rate and piglet survival traits J. Anim. Sci. 2006. 84:1991-1998
A. Tomas, J. Casellas O. Ramirez, M. Perez-Enciso, M, C. Rodrigoez, J. L. Noguera and A. Sanchez (2006) Polymorphisms of the porcine dopamine?-hydroxylase gene and their relation to reproduction and piglet survivability in an Iberian-Meishan F2 intercross. Animal Genetics 37: 279
K WIMMERS, N T NGU, E MURANI, K SCHELLANDER and S PONSUKSIL (2006) Linkage and expression analysis to elucidate the genetic background of muscle structure and meat quality in the pig Arch. Tierz., Dummerstorf (Archives Animal Breeding) 49 Special Issue, pp. 116-125.
Zhu, Zhengmao; Li, Yong; Mo, Delin; Li, Kui; Zhao, Shuhong (2006). Molecular characterization and expression analysis of the porcine caveolin-3 gene. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 346 (1): 7-13 JUL 21 2006
Chen, KF; Knorr, ; Bornemann-Kolatzki, ; Huang, LS; Rohrer, G; Brenig, B. (2006). Characterization of the PGK2 Associated Microsatellite S0719 on SSC7 Suitable for Parentage and QTL Diagnosis Animal Biotechnology, 17(1): 43-49
Lin, C-L, D.G.J. Jennen, S. Ponsuksili, E. Tholen, D. Tesfaye, K. Schellander & K. Wimmers. (2006). Haplotype analysis of beta-actin gene for its association with sperm quality and boar fertility. J. Animal Breeding and Genetics. 123(6): 384
Cepica, S., M. Masopust, A. Knoll, H. Bartenschlager, M. Yerle, G. A. Rohrer, H. Geldermann (2006) Linkage and RH mapping of 10 genes to a QTL region for fatness and muscling traits on pig chromosome X Animal Genetics. 37(6): 603
Peng, Y. B., M. Yerle, B. Liu (2006) Mapping of nine porcine interferon regulatory factor genes Animal Genetics. Vol. 37 Issue 6 Page 600
Asako ANDO and Patrick CHARDON (2006) Gene organization and polymorphism of the swine major histocompatibility complex Animal Science Journal. 77(2): 127
G. Ottoa, R. Roehea, b, H. Looftc, L. Thoelkingc, P.W. Knapc, M.F. Rothschild, G.S. Plastowe and E. Kalm (2006). Associations of DNA markers with meat quality traits in pigs with emphasis on drip loss. Meat Science, 75(2):185-195.
K-T Leea, E-W Parka, S Moonc, H-S Parka, H-Y Kima, G-W Janga, B-H Choia, H.Y. Chunga, J-W Leea, I-C Cheonga, S-J Oha, H Kimc, D-S Suhb and T-H Kim (2006) Genomic sequence analysis of a potential QTL region for fat trait on pig chromosome 6. Genomics, 87(2): 218-224.
Yu, M., B. Geiger, N. Deeb & M.F. Rothschild (2006) Liver X receptor alpha and beta genes have the potential role on loin lean and fat content in pigs Journal of Animal Breeding and Genetics. 123(2): 81
Banghua Shang and Linsheng Lian (2006) Application progress of microsatellite marker on genetics and breeding in pig. Modern Journal of Animal Husbandry and Veterinary Medicine, 2006 No.12 P.67-70
Arch. Tierz., Dummerstorf Eduard MurÁi, Siriluck Ponsuksili, Karl Schellander and Klaus Wimmers (2006). Identification and characterization of an AFLP marker associated with carcass composition in the pig. Arch. Tierz., Dummerstorf, 49 (2006) 4, 413-414
Max F. Rothschild, Zhi-Liang Hu & Zhihua Jiang (2007) Advances in QTL Mapping in Pigs. Int. J. Biol. Sci. 2007; 3:192-197.
Kefei Chen, Tara Baxter, William M. Muir, Martien A. Groenen, Lawrence B. Schook (2007) Genetic Resources, Genome Mapping and Evolutionary Genomics of the Pig (Sus scrofa). Int. J. Biol. Sci. 2007; 3(3):153-165.
Joel I. Welle (2007). Current and Future Developments in Patents for Quantitative Trait Loci in Dairy Cattle. Recent Patents on DNA & Gene Sequences 2007, 1, 69-76.
Szczerbal I, Chmurzynska A, Switonski M (2007). Cytogenetic mapping of eight genes encoding fatty acid binding proteins (FABPs) in the pig genome. Cytogenet Genome Res 118:63-66 (DOI: 10.1159/000106442).
J Nadaf, H Gilbert, F Pitel, C M Berri, K Feve, C Beaumont, M J Duclos, A Vignal, T E Porter, J Simon, S E Aggrey, L A Cogburn and E L Bihan-Duval. (2007). Identification of QTL controlling meat quality traits in an F2 cross between two chicken lines selected for either low or high growth rate. BMC Genomics, 8:155.
S Ponsuksili, E Murani, C Walz, M Schwerin and K Wimmers (2007). Pre- and postnatal hepatic gene expression profiles of two pig breeds differing in body composition: insight into pathways of metabolic regulation. Physiol. Genomics 29: 267-279.
M. Ron and J. I. Weller (2007). From QTL to QTN identification in livestock: winning by points rather than knock-out: a review. Animal Genetics Volume 38 Issue 5 Page 429-439.
Alexander, L.J.; MacNeil, M.D.; Geary, T.W.; Snelling, W.M.; Rule, D.C.; Scanga, J.A (2007). Quantitative trait loci with additive effects on palatability and fatty acid composition of meat in a Wagyu–Limousin F2 population. Animal Genetics, Volume 38, Number 5, pp.506-513(8).
Yu Gaoa, Ran Zhanga, Xiaoxiang Hua and Ning Li (2007). Application of genomic technologies to the improvement of meat quality of farm animals. Meat Science Volume 77, Issue 1, September 2007, pp.36-45.
R. Davoli and S. Braglia (2008). Molecular approaches in pig breeding to improve meat quality. Brief Funct Genomic Proteomic, January 21, 2008.
Stephanie D McKay, Robert D Schnabel, Brenda M Murdoch, Lakshmi K Matukumalli, Jan Aerts, Wouter Coppieters, Denny Crews, Emmanuel Dias Neto, Clare A Gill, Chuan Gao, Hideyuki Mannen, Paul Stothard, Zhiquan Wang, Curt P Van Tassell, John L Williams, Jeremy F Taylor, and Stephen S Moore (2007). Whole genome linkage disequilibrium maps in cattle. BMC Genetics, 2007; 8: 74
Elisabeth Jonas, Heinz-Josef Schreinemachers, Tina Kleinwäter1 Cemal Ü, Ina Oltmanns, Sylvio Tetzlaff, Danyel Jennen, Dawid Tesfaye, Siriluck Ponsuksili, Eduard Murani, Heinz Juengst, Ernst Tholen, Karl Schellander and Klaus Wimmers (2008). QTL for the heritable inverted teat defect in pigs. Mammalian Genome. 19(2): 127-138.


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